A snow-covered town with a mix of residential and commercial buildings, a clear sky, and distant hills.

Hotels in Clayton

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Where to stay in Clayton?

A multi-story hotel with a well-maintained lawn and outdoor seating area.

A lobby with a stone fireplace, wicker furniture, and a chandelier.

An outdoor seating area with a fire pit, chairs, and tables.

A bar area with a sign reading "1000 Islands Bar" and various bottles and glasses.

1. 1000 Islands Harbor Hotel

Clayton

$129

$143 total

includes taxes & fees

Nov 1 - Nov 2

A wooden-paneled room with two framed pictures of lighthouses, a bed with floral bedding, and wall-mounted lamps.

A stone building with a steep staircase leading to a door.

A lakeside view with a dock, benches, and a row of houses.

A room with a view of a lake, wicker chairs, a small table, and a basket.

2. Chateau Country Inn

Clayton

$113

$125 total

includes taxes & fees

Oct 14 - Oct 15

A view of a large body of water with a historic building in the background.

A reception area with a large ship's wheel, a white counter, and a woman standing behind it.

A hotel room with a large bed, a sofa, a dining table with chairs, and a view of a lake through large windows.

A room with a sofa, a lamp, and a view of the water.

3. Capt. Thomson's Resort

Alexandria Bay Downtown

$80

$89 total

includes taxes & fees

Oct 15 - Oct 16

A spacious living room with a wooden ceiling, a fireplace, a television, and a dining area with red chairs and a table.

A hotel room with a wooden floor, a bed with white bedding, a desk with a computer, a chair, and a view of the outdoors through a sliding door.

A clear swimming pool with a metal railing, surrounded by lounge chairs and a fenced area.

A wooden deck with a table and striped chairs, surrounded by a white fence and trees.

4. Capt.'s Inn & Suites

Alexandria Bay

$55

$61 total

includes taxes & fees

Oct 4 - Oct 5

A waterfront hotel with multiple boats docked in front.

A marina with several boats docked, a clear sky, and a distant shoreline with trees and a castle-like structure.

A hotel room with a large bed, a bathroom with a bathtub, a desk, and a TV.

A large waterfront hotel with multiple balconies, a marina with boats, and a covered outdoor seating area.

5. Riveredge Resort

Alexandria Bay Downtown

$99

$110 total

includes taxes & fees

Nov 1 - Nov 2

A marina with boats docked, a dock extending into the water, and a building with a large water tower in the background.

A marina with boats docked, a grassy area with outdoor seating, and a large industrial building.

A motel with a pool, outdoor seating, and a parking lot.

A lakeside property with a dock, boats, and outdoor seating.

6. Otter Creek Inn

Alexandria Bay Downtown

$70

$78 total

includes taxes & fees

Oct 4 - Oct 5

A white building with the letters "RL" on the front.

A small white building with a dark front door, two windows with shutters, and a small porch with white Adirondack chairs.

A compact kitchen with a microwave, toaster, and sink. There is a dining table with chairs, a black leather sofa, and a small trash bin.

A hotel room with two single beds, each with a green and white bedspread, a nightstand with a lamp, and a framed picture on the wall.

7. Rock Ledge Motel

Alexandria Bay

$84

$93 total

includes taxes & fees

Oct 4 - Oct 5

A hotel room with two beds, a dresser, a chair, a television, and a window with curtains.

A multi-story building with a balcony and a staircase leading to the upper floor.

A spacious indoor area with high ceilings, exposed beams, and a long counter.

A compact kitchen with a microwave, coffee maker, and sink.

8. Thousand Islands Country Club

Wellesley Island

$139

$154 total

includes taxes & fees

Oct 5 - Oct 6

A hotel room with a bed, a bathroom with a bathtub, and a picture on the wall.

A reception area with a Days Inn sign, two blue armchairs, a wooden reception desk, and a chandelier.

A breakfast area with wooden furniture, a coffee machine, and a sign that reads "Daybreak Breakfast".

A Days Inn hotel with a two-story structure, a covered entrance, and a parking lot.

9. Days Inn by Wyndham Watertown Fort Drum

Calcium

$68

$76 total

includes taxes & fees

Oct 18 - Oct 19

A marina at night with boats docked, a flag, and a building with a sign.

A compact kitchenette with a stove, oven, and a small sink.

A compact hotel room with a kitchenette, a bed, a desk, and a chair.

A row of single-story buildings with attached garages, a covered parking area, and a well-lit street at night.

10. Hills Motor Court & Marina

Alexandria Bay Downtown

$85

$94 total

includes taxes & fees

Oct 6 - Oct 7

A waterfront property with docked boats, a boathouse, and a large house with a landscaped garden.

A waterfront property named Bonnie Castle Manor with a large house, a covered patio, and a dock.

An indoor swimming pool with multiple lanes, white railings, and hanging pendant lights.

A gazebo with a white frame and a dark roof, overlooking a body of water and a distant building.

11. Bonnie Castle Resort & Marina

Alexandria Bay Downtown

$89

$103 total

includes taxes & fees

Oct 18 - Oct 19

A room with a bed, a chair, a table, and a lamp.

A hotel room with a bed, a desk, a chair, and a small table.

A motel with a 'Budget' sign, a visible office, and several parked cars.

A bathroom with a bathtub, a shower, and a toilet.

12. Allen's Budget Motel

Watertown

$60

$67 total

includes taxes & fees

Oct 5 - Oct 6

A wooden double door with intricate carvings and a sign above stating "ROXY HOTEL EST. 1894".

A hotel reception area with a wooden desk, a fire alarm, a staircase, and a chandelier.

A hotel corridor with patterned carpet, wooden doors, and beige walls.

A four-poster bed with a dark wooden frame and intricate carvings, a white bedspread, and several decorative pillows in a bedroom with a large mirror and a bedside table with a lamp.

13. The Roxy Cape Vincent

Cape Vincent

$124

$138 total

includes taxes & fees

Oct 5 - Oct 6

A hotel lobby with a bar area, seating arrangements, and a television mounted on the wall.

An indoor swimming pool with clear lane markings, a no diving sign, and a lifeguard chair.

A hotel room with a large bed, a desk with a lamp, a chair, and a view of the outdoors.

A gym with treadmills, elliptical machines, and free weights.

14. Hampton Inn Watertown

Watertown

$98

$108 total

includes taxes & fees

Oct 30 - Oct 31

A gazebo with a stone fire pit in the center, surrounded by outdoor seating and a brick pathway.

A covered outdoor seating area with stone pillars, a high-roofed pavilion, and a view of the Hilton Garden Inn hotel in the background.

A hotel pool area with multiple hot tubs, a reception desk, and seating areas.

A spacious lobby with a patterned carpet, wooden beams, and a reception desk.

15. Hilton Garden Inn Watertown/Thousand Islands

Watertown

$135

$150 total

includes taxes & fees

Oct 16 - Oct 17

A Ramada hotel entrance with a clear sky, a red awning, and two potted plants.

A hotel room with a bed, a TV, a desk, and two lamps.

A lobby with a reception desk, seating area, and a large potted plant.

A gazebo with a white railing and a tiled roof, surrounded by grass and potted plants.

16. Ramada by Wyndham Watertown/Thousand Islands NY

Watertown

$57

$63 total

includes taxes & fees

Oct 30 - Oct 31

A cozy living room with a floral sofa, a matching ottoman, and a vase of flowers.

A bedroom with a four-poster bed, a sitting area with a sofa and armchair, and a fireplace.

17. Thousand Island Hart House

Wellesley Island

$225

$250 total

includes taxes & fees

Oct 16 - Oct 17

An aerial view of a coastal residential area with houses, docks, and clear turquoise water.

A wooden deck with a table and chairs overlooking a body of water.

A wooden interior with large windows overlooking a lake, a round table, and chairs.

A cozy cabin with a wooden interior, a sofa, a small table, and large windows overlooking a body of water.

18. Angel Rock Waterfront Cottages and Vacation Homes

Cape Vincent

$206

$228 total

includes taxes & fees

Oct 4 - Oct 5

A hotel room with a large bed, a nightstand, a lamp, a chair, and a window with curtains.

A spacious lobby with a fireplace, blue armchairs, and a chandelier.

A hotel kitchen with wooden cabinets, granite countertops, and a coffee station with various coffee makers and containers.

An indoor swimming pool with clear blue water, lounge chairs, and a sunbed area.

19. Comfort Inn & Suites Watertown - 1000 Islands

Watertown

$96

$107 total

includes taxes & fees

Oct 25 - Oct 26

A Holiday Inn Express building with a covered entrance, a landscaped garden, and a parking area.

A hotel room with a bed, a sitting area, a bathroom with a bathtub, and a desk with a lamp.

A hotel lobby with a reception desk, a wooden reception desk, a glass door entrance, and a ceiling light fixture.

A modern breakfast bar with a coffee machine, cereal, and fruit options.

20. Holiday Inn Express Hotel & Suites Watertown-Thousand Island by IHG

Watertown

$111

$123 total

includes taxes & fees

Nov 1 - Nov 2

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Go beyond your typical stay in Clayton

Our prices for hotels in Clayton are cheapest in April

Top landmarks in Clayton

1000 Islands River Rat Cheese

9.2/10 (78 reviews)

Don't visit Clayton without stopping off at 1000 Islands River Rat Cheese, a famous shop that should make the top of your list. Why not take a stroll along the riverfront and watch the sunset while you're here?

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Clayton Marina

9.0/10 (143 reviews)

Imagine strolling along Clayton Marina for some great waterfront pics. It's located 0.7 mi (1.1 km) from central Clayton.

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Cedar Point State Park

8.4/10 (18 reviews)

Cedar Point State Park is 6 mi (9.7 km) from central Clayton, why not stop by during your stay.

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The Clayton Opera House

8.4/10 (13 reviews)

If you're after a night at the opera while in the center of Clayton, try and grab some tickets at The Clayton Opera House. If you want to experience more of the culture Clayton has to offer, head to 1000 Islands River Rat Cheese, Clayton Marina, and Thousand Islands Museum.

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Thousand Islands Museum

7.8/10 (17 reviews)

The center of Clayton is home to cultural attractions like Thousand Islands Museum, so you might want to stop by during your stay. Why not take a stroll along the riverfront and watch the sunset while you're here? If you want to experience more of the culture Clayton has to offer, head to 1000 Islands River Rat Cheese, Clayton Marina, and The Clayton Opera House.

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Antique Boat Museum

9.0/10 (72 reviews)

If visiting museums in Clayton are on your list, you might want to check out the upcoming exhibitions at Antique Boat Museum, located in the heart of town. Why not take a stroll along the riverfront and watch the sunset while you're here? If you want to see more of the museums in Clayton, you can easily walk to Thousand Islands Museum.

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Coyote Moon Vineyards

9.0/10 (37 reviews)

Travelers might want a tour of Coyote Moon Vineyards, just one of the places to visit, and located 3.2 mi (5.1 km) from central Clayton. Why not take a stroll along the riverfront and watch the sunset while you're here?

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C-Way Golf Course

7.2/10 (9 reviews)

You might want to play some rounds at C-Way Golf Course, located 2.6 mi (4.1 km) from central Clayton. If C-Way Golf Course doesn't quite scratch your golfing itch, Gananoque Golf and Country Club is just a short drive away.

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Learn more about Clayton

Glide along the St. Lawrence River where the Thousand Islands scatter like emeralds, with Boldt Castle rising from the water like a fairy tale come true. The Antique Boat Museum celebrates Clayton's maritime heritage with gleaming wooden vessels that harken back to a more elegant era. Downtown's boutiques and galleries occupy historic buildings where shopkeepers share island lore between sales. At waterfront restaurants, freshly caught fish arrives with views that rival the flavor. Summer brings the Opera House to life with performances that echo through streets where ice cream shops compete for your attention. Rent a boat to explore hidden coves, or sip local vintages at Coyote Moon Vineyards while plotting tomorrow's river adventures.

See all hotels in Clayton

Check out reviews of Clayton hotels guests love

1000 Islands Harbor Hotel

Clayton

10/10 Exceptional

William

Capt. Thomson's Resort

Alexandria Bay Downtown

10/10 Exceptional

Heather

Angel Rock Waterfront Cottages and Vacation Homes

Cape Vincent

10/10 Exceptional

Catherine

Rock Ledge Motel

Alexandria Bay

10/10 Exceptional

Jim

Riveredge Resort

Alexandria Bay Downtown

10/10 Exceptional

James

The Roxy Cape Vincent

Cape Vincent

10/10 Exceptional

Bonnie gene

Hilton Garden Inn Watertown/Thousand Islands

Watertown

10/10 Exceptional

We enjoyed our stay at Hilton Garden in, it's basically just off the highway in the middle of a strip mall but you wouldn't know this once you are inside. It's a little oasis in a sea of concrete. The rooms were lovely and the beds very comfortable. The staff were very helpful at the front desk and it was a bonus to have a small pool and gym. We were especially impressed by one staff member (I wish I could remember his name) who accommodated our needs at the bar after 9pm. It's a great base to...

TazAid

Hampton Inn Watertown

Watertown

10/10 Exceptional

Charlene

Otter Creek Inn

Alexandria Bay Downtown

10/10 Exceptional

Otter Creek Inn was just like the kind of motel I used to stay at when I traveled with my parents as a kid. It was comfortable and clean. It seemed to be very family friendly and quiet enough to get a good night's sleep! I had no idea when I booked it, but it was easily within walking distance of all the attractions I wanted to see in the 'tourist' center of Alexandria Bay. I was genuinely excited with the location! The woman working the front desk was helpful and kind and helped us map out all...

Anonymous traveler

Holiday Inn Express Hotel & Suites Watertown-Thousand Island by IHG

Watertown

10/10 Exceptional

Alice

A building with a balcony overlooking a body of water, surrounded by greenery.

A hotel room with two beds, a ceiling fan, wall-mounted lamps, and framed pictures.

A building with a sign reading "GILLHOUSE" and a stone wall to the left.

A bar area with a long counter, multiple stools, and shelves stocked with bottles and glasses.

The GillHouse

Henderson Harbor

10/10 Exceptional

Christine

A four-poster bed with a canopy, a bedside table with a lamp, a chair, and a television on a stand.

A marina with multiple boats docked, surrounded by trees and a clear sky.

A building with a flat roof and a parking lot in front.

A hallway with a painting of a lighthouse, two upholstered chairs, a wooden console table with a vase of flowers, and a mirror on the wall.

Harbor House Inn

Sackets Harbor

10/10 Exceptional

Upon arrival our 2 rooms were upgraded from the 3rd floor to 2nd (main) floor and a refrigerator was delivered for our convenience. We were pleasantly surprised at the quality and quantity of breakfast items we discovered both mornings; including fresh apricots! Would highly recommend the Inn and the variety of delightful restaurants within walking distance. Our favorites, as always, are Tin Pan Galley and Good Fellos!

Denise

A hotel lobby with a stone wall, green upholstered chairs, a round white table, and a beige sofa.

A reception area with two reception desks, a wall with a tree branch pattern, and a seating area with tables and chairs.

A swimming pool with a changing room, sun loungers, and a hot tub area.

A modern dining area with multiple tables and chairs, pendant lighting, and artwork on the walls.

Fairfield Inn & Suites Watertown Thousand Islands

Watertown

10/10 Exceptional

paula

Days Inn by Wyndham Watertown Fort Drum

Calcium

10/10 Exceptional

James

Comfort Inn & Suites Watertown - 1000 Islands

Watertown

10/10 Exceptional

Samuel

Allen's Budget Motel

Watertown

10/10 Exceptional

Pat

Hills Motor Court & Marina

Alexandria Bay Downtown

10/10 Exceptional

John

Frequently Asked Questions

What accommodations do travelers recommend in Clayton?

Guests like 1000 Islands Harbor Hotel, West Winds Motel & Cottages and Chateau Country Inn .

Can I book a refundable accommodation in Clayton?

If you need the flexibility to change your travel plans to Clayton, most hotels offer refundable* rates you can book. You can find these accommodations by searching our site and using the "fully refundable" filter to narrow the results down.

Where can I stay in Clayton if I want a vacation home instead of a traditional hotel?

If you're looking for a good alternative to a hotel, look over our selection of 44 vacation homes. You can also consider one of the 23 apartments or 34 cottages.

What will the weather in Clayton be like during my vacation?

The warmest months in Clayton are usually July and August with an average temp of 66°F. January and February are the chilliest months when the average temp is 26°F. The rainiest months are October and April.

Why should I book my Clayton hotel through Hotels.com?

There are plenty of reasons to book your Clayton travel with us: our free cancellations on selected hotels* gives you the flexibility you're looking for, and with One Key™, our rewards program, you will be able to earn and use OneKeyCash™** on all eligible bookings such as hotels, car rentals, flights, vacation rentals and more on Hotels.com, Expedia and Vrbo.

Hotels in Clayton

Free cancellation options if plans change

Earn rewards on every night you stay

Save more with Member Prices

Check prices for these dates

Where to stay in Clayton?

1. 1000 Islands Harbor Hotel

2. Chateau Country Inn

3. Capt. Thomson's Resort

4. Capt.'s Inn & Suites

5. Riveredge Resort

6. Otter Creek Inn

7. Rock Ledge Motel

8. Thousand Islands Country Club

9. Days Inn by Wyndham Watertown Fort Drum

10. Hills Motor Court & Marina

11. Bonnie Castle Resort & Marina

12. Allen's Budget Motel

13. The Roxy Cape Vincent

14. Hampton Inn Watertown

15. Hilton Garden Inn Watertown/Thousand Islands

16. Ramada by Wyndham Watertown/Thousand Islands NY

17. Thousand Island Hart House

18. Angel Rock Waterfront Cottages and Vacation Homes

19. Comfort Inn & Suites Watertown - 1000 Islands

20. Holiday Inn Express Hotel & Suites Watertown-Thousand Island by IHG

Go beyond your typical stay in Clayton

Price trends for hotels in Clayton

October

Top landmarks in Clayton

1000 Islands River Rat Cheese

Clayton Marina

Cedar Point State Park

The Clayton Opera House

Thousand Islands Museum

Antique Boat Museum

Coyote Moon Vineyards

C-Way Golf Course

Learn more about Clayton

Check out reviews of Clayton hotels guests love

1000 Islands Harbor Hotel

10/10 Exceptional

Capt. Thomson's Resort

10/10 Exceptional

Angel Rock Waterfront Cottages and Vacation Homes

10/10 Exceptional

Rock Ledge Motel

10/10 Exceptional

Riveredge Resort

10/10 Exceptional

The Roxy Cape Vincent

10/10 Exceptional

Hilton Garden Inn Watertown/Thousand Islands

10/10 Exceptional

Hampton Inn Watertown

10/10 Exceptional

Otter Creek Inn

10/10 Exceptional

Holiday Inn Express Hotel & Suites Watertown-Thousand Island by IHG

10/10 Exceptional

The GillHouse

10/10 Exceptional

Harbor House Inn

10/10 Exceptional

Fairfield Inn & Suites Watertown Thousand Islands

10/10 Exceptional

Days Inn by Wyndham Watertown Fort Drum

10/10 Exceptional

Comfort Inn & Suites Watertown - 1000 Islands

10/10 Exceptional

Allen's Budget Motel

10/10 Exceptional

Hills Motor Court & Marina

10/10 Exceptional

Frequently Asked Questions

What accommodations do travelers recommend in Clayton?

Can I book a refundable accommodation in Clayton?

Where can I stay in Clayton if I want a vacation home instead of a traditional hotel?

What will the weather in Clayton be like during my vacation?

Why should I book my Clayton hotel through Hotels.com?